PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA12G03130.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 277aa    MW: 31064.6 Da    PI: 7.7821
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA12G03130.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3962.5e-3036129188
                      EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 
                      f+k ltpsdv+k++rlv+pk++ae++     g + e++  l++edesg+ W+++++y+ +s++yvltkGW+++vk+++L++gD+v F++++   
  ONIVA12G03130.1  36 FEKPLTPSDVGKLNRLVIPKQHAERYfplggGDSGEKGLLLSFEDESGKPWRFRYSYWTSSQSYVLTKGWSRYVKEKRLDAGDVVHFERVRGlG 129
                      99****************************9555568889************************************************876543 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.8E-4131145IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.19E-3033127IPR015300DNA-binding pseudobarrel domain
CDDcd100171.19E-2835127No hitNo description
PROSITE profilePS5086313.63436142IPR003340B3 DNA binding domain
SMARTSM010191.8E-2236141IPR003340B3 DNA binding domain
PfamPF023622.7E-2736140IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010073Biological Processmeristem maintenance
GO:0010358Biological Processleaf shaping
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MAMHPLAQGH PQAWPWGVAM YTNLHYHHHY EREHLFEKPL TPSDVGKLNR LVIPKQHAER  60
YFPLGGGDSG EKGLLLSFED ESGKPWRFRY SYWTSSQSYV LTKGWSRYVK EKRLDAGDVV  120
HFERVRGLGA ADRLFIGCRR RGESAPAPPP AVRVTPQPPA LNGGEQQPWS PMCYSTSGSS  180
YDPTSPANSY AYHRSVDQDH SDILHAGESQ RDADAKSSSA ASAPPPSRRL RLFGVNLDCG  240
PEPEADQATA MYGYMHHQSP YAAVSTVPNY WSVFFQF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A4e-443315111128DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL9287580.0AL928758.3 Oryza sativa chromosome 12, . BAC OSJNBb0075N21 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618154.10.0PREDICTED: B3 domain-containing protein Os11g0156000-like
SwissprotQ53QI01e-136Y1160_ORYSJ; B3 domain-containing protein Os11g0156000
TrEMBLA0A0D3HRM60.0A0A0D3HRM6_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0J6Z50.0A0A0E0J6Z5_ORYNI; Uncharacterized protein
TrEMBLI1R4810.0I1R481_ORYGL; Uncharacterized protein
STRINGORGLA12G0033700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24463889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.21e-52B3 family protein